Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
ESCA rs56154439 chr8:41309337 C/T 1.41E-7 183 12.93 18.53 2.7 KM Plot
ESCA rs56188408 chr8:8592158 G/C 3.88E-5 184 13.37 13.67 4.97 KM Plot
ESCA rs56195320 chr1:3206647 G/T 2.95E-9 178 12.85 17.87 3.22 KM Plot
ESCA rs56260067 chr19:44450174 G/A 3.32E-5 181 13.03 15.7 3.73 KM Plot
ESCA rs56303128 chr9:90919705 G/T 5.99E-5 180 13.37 13.1 3.93 KM Plot
ESCA rs56411170 chr8:41348957 A/G 1.9E-7 183 13.02 17.27 2.7 KM Plot
ESCA rs56969660 chr8:2447168 C/A 1.6E-9 180 13.33 14.15 2.93 KM Plot
ESCA rs57041050 chr8:2413718 A/G 4.67E-9 181 13.1 15.57 2.93 KM Plot
ESCA rs57267940 chr8:2441250 T/C 1.88E-9 179 13.35 14.65 2.93 KM Plot
ESCA rs57415041 chr8:2468215 C/G 2.11E-9 178 13.07 15.57 2.93 KM Plot
ESCA rs57530757 chr9:90919778 G/A 5.56E-5 182 13.37 13.1 3.93 KM Plot
ESCA rs57549085 chr16:86449891 A/G 1.35E-5 182 13.4 12.77 3.2 KM Plot
ESCA rs57644906 chr11:129921479 G/A 9.66E-5 180 13.1 12.2 3.47 KM Plot
ESCA rs58025499 chr9:90924979 T/C 1.24E-7 183 13.37 13.38 3.7 KM Plot
ESCA rs5816506 chr16:30064019 AAAAT/A 8.53E-8 180 13.03 14.12 3.6 KM Plot